Scanpy: Single-Cell Analysis
1. **Start with the template**: Use `assets/analysis_template.py` as a starting point
LLM Evaluation
Evaluated by: xiaomi/mimo-v2-flash:free
Last evaluated: March 29, 2026
Prompt Preview
---
name: scanpy
description: Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use anndata.
license: SD-3-Clause license
metadata:
skill-author: K-Dense Inc.
---
# Scanpy: Single-Cell Analysis
## Overview
Scanpy is a scalable Python...Full prompt length: 11322 characters
Tools & Technologies
- python
- Python