Phylogenetics
- **MAFFT**: https://mafft.cbrc.jp/alignment/software/
LLM Evaluation
Evaluated by: xiaomi/mimo-v2-flash:free
Last evaluated: March 29, 2026
Prompt Preview
---
name: phylogenetics
description: Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
license: Unknown
metadata:
skill-author: Kuan-lin Huang
---
# Phylogenetics
## Overview
Phylogenetic analysis reconstructs the evolutionary history of biological sequences...
Full prompt length: 13879 characters
Tools & Technologies
- python
- Python