ETE Toolkit Skill

1. **Preserve branch lengths**: Use `preserve_branch_length=True` when pruning for phylogenetic analysis

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Evaluated by: xiaomi/mimo-v2-flash:free

Last evaluated: March 29, 2026

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---
name: etetoolkit
description: Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
license: GPL-3.0 license
metadata:
    skill-author: K-Dense Inc.
---

# ETE Toolkit Skill

## Overview

ETE (Environment for Tree Exploration) is a toolkit for phylogenetic and hierarchical tree analysis. Manipulate trees, analyze evolutionary events, visualize results, and integrate with b...

Full prompt length: 17884 characters

Tools & Technologies

• python
• sqlite