Arboreto

**Empty results**: Check data format (genes as columns), verify TF names match gene names

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Evaluated by: xiaomi/mimo-v2-flash:free

Last evaluated: March 29, 2026

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3.0 /5

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---
name: arboreto
description: Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
license: BSD-3-Clause license
metadata:
    skill-author: K-Dense Inc.
---

# Arboreto

## Overview

Arboreto is a computational libra...

Full prompt length: 6929 characters

Tools & Technologies

• python